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Precision Medicine Clinic: Molecular Tumor Board is a case-based series designed to help clinicians optimize molecular testing for their patients. The Editors of The Oncologist encourage institutions to share their findings and experiences to help improve the precision of genomic oncology and fulfill its promise of improved outcomes for patients. This collection, continuously updated as articles are published, highlights a diverse set of patients exhibiting a range of tumor types and mutations. We hope you find the clinical outcomes beneficial in your practice.
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ALK
Metastatic Low-Grade Sarcoma with CARS-ALK Fusion Dramatically Responded to Multiple ALK Tyrosine Kinase Inhibitors: A Case Report with Comprehensive Genomic Analysis
- First Published: 30 September 2020
This article reports the case of a patient with advanced low-grade sarcoma with uncertain histopathological diagnosis. Next-generation sequencing detected CARS-ALK fusion, which allowed for successful treatment using ALK inhibitors.
ALK-Rearranged Non-Small Cell Lung Cancer in 2020: Real-World Triumphs in an Era of Multigeneration ALK-Inhibitor Sequencing Informed by Drug Resistance Profiling
- First Published: 18 June 2020
This report underscores the importance of genetic analysis of serial biopsies to capture the dynamic therapeutic vulnerabilities within a patient's tumor, while providing a perspective on the complexity of ALK tyrosine kinase inhibitor treatment sequencing. Two cases are presented to illustrate the experiences of patients with advanced ALK-rearranged non-small cell lung cancer, including the effect on their quality of life and the need for holistic care.
Carcinoma of Unknown Primary with EML4-ALK Fusion Response to ALK Inhibitors
- First Published: 24 January 2019
Carcinoma of unknown primary is defined as a malignant tumor for which the primary site of origin cannot be determined, making targeted treatment impossible. This article reports the case of a patient with carcinoma of unknown primary who received targeted therapy according to genetic testing results with good therapeutic effect.
EML4-ALK Rearrangement and Its Therapeutic Implications in Inflammatory Myofibroblastic Tumors
- First Published: 08 May 2018
A case of a patient who was successfully treated with crizotinib for a recurrent ALK-rearranged pulmonary inflammatory myofibroblastic tumor is reported.
A Case of Metastatic Atypical Neuroendocrine Tumor with ALK Translocation and Diffuse Brain Metastases
- First Published: 15 May 2017
A challenge in precision medicine is the identification of actionable driver mutations. Alterations can be identified within the tumor tissue, by small biopsy or fine-needle aspirates, or by noninvasive methods, such as circulating tumor cells or circulating tumor DNA. This article presents a case of atypical neuroendocrine tumor metastatic to the bone and brain for which circulating tumor DNA analysis found an ALK translocation.
Detection of an ALK Fusion in Colorectal Carcinoma by Hybrid Capture-Based Assay of Circulating Tumor DNA
- First Published: 15 May 2017
The case of a patient with metastatic colorectal cancer is presented. This report is the first instance of an ALK fusion in colorectal cancer detected using a ctDNA assay.
BRCA
Metastatic Thymoma Harboring a Deleterious BRCA2 Mutation Derives Durable Clinical Benefit from Olaparib
- First Published: 01 November 2019
The case of a patient with aggressive thymoma is described, including the genotyping results of her tumor, the functional and clinical significance of the mutations in her cancer, and the implications for managing patients with advanced BRCA-mutant thymomas.
Hybrid Capture-Based Tumor Sequencing and Copy Number Analysis to Confirm Origin of Metachronous Metastases in BRCA1-Mutant Cholangiocarcinoma Harboring a Novel YWHAZ-BRAF Fusion
- First Published: 06 April 2018
Biliary tract cancers such as cholangiocarcinoma represent a heterogeneous group of cancers that can be difficult to diagnose. This article reports the case of a patient with a germline BRCA1 mutation who presented with a cholangiocarcinoma driven by the novel YWHAZ-BRAF fusion.
Complete Remission Following Pembrolizumab in a Woman with Mismatch Repair-Deficient Endometrial Cancer and a Germline BRCA1 Mutation
- First Published: 22 February 2018
Endometrial cancer is the most common gynecologic malignancy, accounting for more than 60,000 newly diagnosed cases in the United States. Most cases present at an early stage and can be treated with curative intent; however, those who present with advanced disease or who develop metastatic or recurrent disease, have a poor prognosis. Active standard treatments have been identified in the first-line or adjuvant settings; however, therapeutic options are limited for second- or later-line treatment of the disease. This has prompted interest in molecular testing, particularly for women with recurrent, advanced, or metastatic endometrial cancers.
EGFR
Clinical Benefit of Tyrosine Kinase Inhibitors in Advanced Lung Cancer with EGFR-G719A and Other Uncommon EGFR Mutations
- First Published: 24 September 2020
This article presents the case of patient with advanced non-small cell lung cancer harboring an EGFR-G719A mutation treated with afatinib and reviews the literature regarding the use of first-, second-, and third-generation tyrosine kinase inhibitors in this patient population.
A Rare EGFR–SEPT14 Fusion in a Patient with Colorectal Adenocarcinoma Responding to Erlotinib
- First Published: 22 October 2019
Growing evidence supports gene fusions as good candidates for molecularly targeted therapy in colorectal cancer. This article describes a case of a patient who had a radical right hemicolectomy procedure and suggests that there is value in treating patients harboring EGFR fusions with EGFR-tyrosine kinase inhibitor therapy and that EGFR-SEPT14 fusion may be used as a therapeutic target for colorectal cancer.
Effectiveness of EGFR-TKIs in a Patient with Lung Adenocarcinoma Harboring an EGFR-RAD51 Fusion
- First Published: 07 May 2019
Advanced detection technologies, such as next-generation sequencing, make possible the identification of rare variants of EGFR. This case report describes a patient with lung adenocarcinoma harboring a rare EGFR-RAD51 fusion, with results that might help establish personalized treatment approaches for patients with rare EGFR fusions.
Genetic Profiling of Non-Small Cell Lung Cancer at Development of Resistance to First- or Second-Generation EGFR-TKIs by CAPP-Seq Analysis of Circulating Tumor DNA
- First Published: 25 April 2019
This study performed cancer personalized profiling by deep sequencing (CAPP-Seq) with circulating tumor DNA, a ctDNA-based form of targeted next-generation sequencing, to identify somatic mutations in patients with non-small cell lung cancer (NSCLC) positive for activating mutations of the epidermal growth factor receptor (EGFR) gene at the time of disease progression during treatment with first-generation (gefitinib or erlotinib) or second-generation (afatinib) EGFR tyrosine kinase inhibitors.
Nasoethmoidal Intestinal-Type Adenocarcinoma Treated with Cetuximab: Role of Liquid Biopsy and BEAMing in Predicting Response to Anti-Epidermal Growth Factor Receptor Therapy
- First Published: 02 January 2019
Sinonasal intestinal-type adenocarcinomas are rare tumors with no standard treatment. This article presents a case of recurrent nasoethmoidal intestinal-type adenocarcinoma with a mutation in the KRAS exon 2 codon 12. This case exemplifies how liquid biopsy can aid in the correct and real-time molecular characterization of tumors even in a rare non-metastatic cancer of the head and neck.
ERBB2
Therapeutic Potential of Afatinib for Cancers with ERBB2 (HER2) Transmembrane Domain Mutations G660D and V659E
- First Published: 16 November 2017
Two carcinoma cases with ERBB2 transmembrane domain mutation, that showed clinical improvement with afatinib, are presented. The treatment strategy for the second patient was based on the experience of afatinib treatment for the first patient and was accomplished by sharing information of such rare mutations interinstitutionally. This article highlights the importance of establishing an integrated database of genomic and clinical information, including therapeutic outcomes, to implement precision oncology medicine.
ESR1
Metastatic Breast Cancer With ESR1 Mutation: Clinical Management Considerations From the Molecular and Precision Medicine (MAP) Tumor Board at Massachusetts General Hospital
- First Published: 22 August 2016
This article reviews the key considerations involved in clinical decision making while reviewing a molecular genotyping report. The article presents the case of a 67-year-old postmenopausal female with metastatic estrogen receptor-positive breast cancer, whose tumor progressed on multiple endocrine therapies.
FGFR
Targeted Therapy with Anlotinib for a Patient with an Oncogenic FGFR3-TACC3 Fusion and Recurrent Glioblastoma
- First Published: 19 September 2020
Currently, effective target therapy that can prolong the overall survival of patients with recurrent glioblastoma is limited. This case report describes the promising treatment of a patient with recurrent GBM with an FGFR3-TACC3 fusion treated with anlotinib.
IDH
A Case of Metastatic Biliary Tract Cancer Diagnosed Through Identification of an IDH1 Mutation
- First Published: 23 October 2018
This article reviews the clinical significance of IDH mutations in terms of their molecular specificity to certain histologies, including biliary tract cancers and describes the use of comprehensive genomic profiling as a diagnostic tool. It presents the case of a man for whom comprehensive genomic profiling identified an IDH1 mutation, prompting a second biopsy that revealed pancreaticobiliary adenocarcinoma instead of the originally diagnosed metastatic duodenal adenocarcinoma.
KRAS
KRAS-Mutated, Estrogen Receptor-Positive Low-Grade Serous Ovarian Cancer: Unraveling an Exceptional Response Mystery
- First Published: 02 February 2021
This article reports the case of a patient with aggressive estrogen receptor-positive, KRAS-mutated ovarian cancer who achieved a remarkable response to combination therapy with the MEK inhibitor trametinib and the aromatase inhibitor letrozole, despite earlier failures of treatment with other combination inhibitor treatment. This article focuses on the possibility that subtle variations in mechanisms of action of outwardly similar regimens may have major effects on patient outcomes.
Clinical Benefit of Sorafenib Combined with Paclitaxel and Carboplatin to a Patient with Metastatic Chemotherapy-Refractory Testicular Tumors
- First Published: 06 September 2019
This report describes a patient with testicular cancer who was refractory to chemotherapy and immunotherapy. After confirmation of a KRAS gene amplification, treatment with paclitaxel, carboplatin, and sorafenib was started, and response was promising.